RetrogeneDB ID: | retro_itri_1128 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393382.1:6072214..6072460(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSTOG00000027425 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 60.92 % |
Parental protein coverage: | 51.83 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MPPKFDPNEIKVPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVP-SASALIIKALKEPPRDRKKQ |
..PK..P......K.VGDDI.KATGD...LR.T.K.TIQNR.AQ..VVP..ASAL.IKALK...RDR.KQ | |
Retrocopy | LTPKINPLDLS-SKQVGDDITKATGD*RDLRMTMKSTIQNR*AQ--VVP<LASALVIKALKK*LRDREKQ |
Parental | -KNIKHSGNITFDEIVN |
.K.IKH.GNI.FDEI.. | |
Retrocopy | >KHIKHNGNISFDEIAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |