RetrogeneDB ID: | retro_cfam_955 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 20:2020668..2020965(+) | ||
Located in intron of: | ENSCAFG00000004105 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 72.82 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | ATSALAPKIGP-LGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKE-PPRD |
AT..LAPKI.P.LGLS.K...D.IAKATG.WKGLRI.VKLTIQN.Q.Q.EVV.S.SAL.I..LKE..P.D | |
Retrocopy | ATFVLAPKIRP<LGLSQKNIDDHIAKATGCWKGLRISVKLTIQNKQTQMEVVLSTSALTI*GLKE<TPED |
Parental | RKKQKNIKHSGN-ITFDEIVNIARQM-RHRSLA |
RKKQKNIKHSGN.ITFDEIVNIA..M.RH..LA | |
Retrocopy | RKKQKNIKHSGN>ITFDEIVNIA*EM>RHCALA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |