Parental gene:

RPL12, ENSCAFG00000020136

Aliases:None
Description:60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58]
Organism:Dog (Canis familiaris)
Coordinates:9:55894949..55898774(+)


>ENSCAFG00000020136
GCTCGGAGGAGGCAAAGGTGCAACTGTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAGCTGCCTCCGCCATGCC
GCCTAAGTTCGACCCCAACGAGATCAAAGTCGTGTACCTGAGGTGCACCGGTGGCGAGGTCGGTGCCACGTCTGCCCTGG
CCCCGAAGATCGGCCCGCTGGGTCTGTCTCCAAAAAAGGTTGGTGATGACATCGCCAAGGCAACCGGTGATTGGAAGGGT
CTAAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAAGTGGTACCTTCTGCCTCTGCCCTGATTAT
CAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAGCAGAAAAACATTAAGCACAGTGGAAATATCACTTTTGATGAGA
TTGTCAATATTGCCCGACAGATGCGACACCGATCTTTAGCCAGAGAACTTTCTGGAACCATTAAAGAGATCCTGGGGACT
GCCCAGTCTGTGGGCTGCAATGTTGATGGCCGTCACCCTCATGACATCATAGATGACATCAATAGTGGTGCAGTGGAATG
CCCAGCGGTG

Library Parental gene expression (RPM)
SRP017611_brain 91 .54 RPM
SRP017611_kidney 791 .32 RPM
SRP017611_liver 227 .18 RPM
SRP012049_cerebellum 305 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016712 ortholog_one2one 15 retrogenes
retro_amel_1131, retro_amel_1172, retro_amel_1208, retro_amel_1400, retro_amel_1508, retro_amel_1558, retro_amel_17, retro_amel_174, retro_amel_1856, retro_amel_203, retro_amel_260, retro_amel_293, retro_amel_688, retro_amel_876, retro_amel_952,
Cavia porcellus ENSCPOG00000013769 ortholog_one2one 18 retrogenes
retro_cpor_1, retro_cpor_1069, retro_cpor_1108, retro_cpor_1373, retro_cpor_140, retro_cpor_1473, retro_cpor_1510, retro_cpor_1513, retro_cpor_1514, retro_cpor_313, retro_cpor_342, retro_cpor_553, retro_cpor_556, retro_cpor_664, retro_cpor_874, retro_cpor_910, retro_cpor_921, retro_cpor_954,
Equus caballus ENSECAG00000010622 ortholog_one2many 17 retrogenes
retro_ecab_1024, retro_ecab_1027, retro_ecab_1119, retro_ecab_157, retro_ecab_335, retro_ecab_379, retro_ecab_457, retro_ecab_475, retro_ecab_605, retro_ecab_666, retro_ecab_679, retro_ecab_699, retro_ecab_708, retro_ecab_843, retro_ecab_895, retro_ecab_967, retro_ecab_973,
Echinops telfairi ENSETEG00000006941 ortholog_one2one 7 retrogenes
retro_etel_1508, retro_etel_1714, retro_etel_318, retro_etel_345, retro_etel_750, retro_etel_919, retro_etel_983,
Felis catus ENSFCAG00000010302 ortholog_one2one 31 retrogenes
retro_fcat_1078, retro_fcat_1115, retro_fcat_1118, retro_fcat_1149, retro_fcat_1206, retro_fcat_1276, retro_fcat_1288, retro_fcat_1298, retro_fcat_1376, retro_fcat_1482, retro_fcat_1527, retro_fcat_1637, retro_fcat_1638, retro_fcat_1676, retro_fcat_1854, retro_fcat_1873, retro_fcat_1977, retro_fcat_2009, retro_fcat_302, retro_fcat_35, retro_fcat_352, retro_fcat_359, retro_fcat_415, retro_fcat_455, retro_fcat_502, retro_fcat_509, retro_fcat_53, retro_fcat_638, retro_fcat_767, retro_fcat_819, retro_fcat_902,
Latimeria chalumnae ENSLACG00000015373 ortholog_one2many 3 retrogenes
retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Myotis lucifugus ENSMLUG00000009551 ortholog_one2one 2 retrogenes
retro_mluc_1222, retro_mluc_1797,
Myotis lucifugus ENSMLUG00000013404 possible_ortholog 1 retrogene
retro_mluc_14,
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mustela putorius furo ENSMPUG00000013832 ortholog_one2one 34 retrogenes
retro_mputfur_1102, retro_mputfur_1104, retro_mputfur_1137, retro_mputfur_1192, retro_mputfur_1223, retro_mputfur_1283, retro_mputfur_1329, retro_mputfur_1467, retro_mputfur_1526, retro_mputfur_1580, retro_mputfur_260, retro_mputfur_331, retro_mputfur_363, retro_mputfur_445, retro_mputfur_489, retro_mputfur_500, retro_mputfur_508, retro_mputfur_521, retro_mputfur_533, retro_mputfur_534, retro_mputfur_544, retro_mputfur_559, retro_mputfur_594, retro_mputfur_61, retro_mputfur_622, retro_mputfur_632, retro_mputfur_651, retro_mputfur_824, retro_mputfur_828, retro_mputfur_843, retro_mputfur_868, retro_mputfur_884, retro_mputfur_913, retro_mputfur_977,
Otolemur garnettii ENSOGAG00000000597 possible_ortholog 120 retrogenes
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sarcophilus harrisii ENSSHAG00000017864 possible_ortholog 8 retrogenes
retro_shar_140, retro_shar_266, retro_shar_284, retro_shar_335, retro_shar_346, retro_shar_453, retro_shar_508, retro_shar_646,
Ictidomys tridecemlineatus ENSSTOG00000027425 ortholog_one2one 7 retrogenes
retro_itri_1128, retro_itri_1197, retro_itri_1498, retro_itri_445, retro_itri_790, retro_itri_833, retro_itri_840,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_76 93.94 100.00
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2. retro_cfam_437 92.78 94.21
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3. retro_cfam_588 93.33 63.16
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4. retro_cfam_706 68.02 100.00
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5. retro_cfam_728 71.27 93.16
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6. retro_cfam_748 77.68 66.06
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7. retro_cfam_759 56.67 62.11
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8. retro_cfam_850 70.37 80.61
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9. retro_cfam_950 73.02 98.95
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10. retro_cfam_955 72.82 60.00
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11. retro_cfam_1016 73.30 99.47
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12. retro_cfam_1139 77.70 83.64
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13. retro_cfam_1141 73.30 90.53
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14. retro_cfam_1143 57.14 60.00
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15. retro_cfam_1151 57.60 64.21
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16. retro_cfam_1166 76.67 93.68
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17. retro_cfam_1181 65.80 99.47
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18. retro_cfam_1203 54.20 66.84
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19. retro_cfam_1257 57.06 91.58
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20. retro_cfam_1470 76.83 97.58
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21. retro_cfam_1484 68.00 90.53
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22. retro_cfam_1558 69.13 78.42
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23. retro_cfam_1591 70.62 99.47
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24. retro_cfam_1597 76.96 98.95
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25. retro_cfam_1632 67.37 98.42
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26. retro_cfam_1796 63.38 72.63
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27. retro_cfam_1880 66.85 95.26
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28. retro_cfam_1986 70.19 62.42
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29. retro_cfam_2009 66.67 96.84
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30. retro_cfam_2094 73.26 98.42
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31. retro_cfam_2194 68.31 74.74
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Download FASTA sequences of all ENSCAFG00000020136 retrocopies