RetrogeneDB ID: | retro_fcat_1298 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:115720251..115720614(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.25 % |
Parental protein coverage: | 62.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RRRRRCNALRSSRIRVHPTPTASTMPPKFDPNEIKVEYLRCTGGEVGATSA--LAPKIGPLGLSPKKVGD |
.RR.RCN.L.SS.I.VHP.P.AST..PKFD.NEI.V.YLRCT..E.GA.....L..K.GPL.LSPK.V.D | |
Retrocopy | QRR*RCNCLWSSQIWVHPSPAASTRLPKFDFNEIRVLYLRCTSEEAGAYLSWPLRSKTGPLSLSPKQVSD |
Parental | DIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQ |
DIAKATGDW.GLRITVKL..QN..AQ.E.VPSAS.LIIKALKE.PRDRKKQ | |
Retrocopy | DIAKATGDWIGLRITVKLILQNT*AQVEAVPSASNLIIKALKELPRDRKKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |