RetrogeneDB ID: | retro_cfam_2094 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:71784329..71784878(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 73.26 % |
Parental protein coverage: | 98.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | RRQRCNCLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIA |
.RQRCNCL.SS......TPA.S...PK..PN.IKV.YLRCT.GEVGATSALAPKIG.LGLSPK..GDDIA | |
Retrocopy | KRQRCNCLPSSQF*DILTPAISILSPKINPNKIKVTYLRCTLGEVGATSALAPKIGLLGLSPK*IGDDIA |
Parental | KATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMR |
KAT.DWKGL.ITVKL.IQNR.AQIEVV.SAS..I.K.LKE.PRDRK.QKNIKHSGN.TF..IVNIA..M. | |
Retrocopy | KATSDWKGLKITVKLIIQNR*AQIEVVLSASTMIMKSLKELPRDRKEQKNIKHSGNVTFYDIVNIAQHMW |
Parental | HRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
H..LAREL.G.IKEIL.TAQSVGC.V.G.HPHDI....NSGAVEC.A | |
Retrocopy | HQCLARELFGIIKEILETAQSVGCYVGGCHPHDI----NSGAVECSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |