RetrogeneDB ID: | retro_cfam_2194 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:89976409..89976835(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 68.31 % |
Parental protein coverage: | 74.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | CLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDW |
C...S.I.VHP.PAAS.MPP..D..E.KV..LRCTG.E.G..SALAPKI..L.LS.K.VG..I.KAT.DW | |
Retrocopy | CFPLS*IQVHPIPAASDMPPRLDLKEVKVAHLRCTGVEIGVMSALAPKISLLDLSVKMVGSAITKATKDW |
Parental | KGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAR |
K.LRITVKLTI..RQ.Q.E.VPSAS.L..KALKEPPR..K.QKN.KHSG.ITFDEIVNIA.QM.H.SLA. | |
Retrocopy | KHLRITVKLTIRDRQIQVEMVPSASVLMTKALKEPPRA*KRQKNFKHSGIITFDEIVNIAQQMWHCSLAK |
Parental | EL |
EL | |
Retrocopy | EL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |