RetrogeneDB ID: | retro_ecab_157 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:13461009..13461395(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.21 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | CTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGD-WKGLRITVKLTIQNRQAQI-EVVPSASALIIKA |
C.G.....TSALAPKIGP...S...V.D.I.KATGD.WK.LR..V.LT.QNR.A....VV.....L.I.A | |
Retrocopy | CRGQGTDPTSALAPKIGP*SIS-*RVSDNITKATGD<WKELRTAVTLTLQNR*ARL<VVVIFTPSLTIRA |
Parental | LKEPPRDRKKQK-NIKHSGNITFDEIVNIARQMRHRSLARELSGT-IKEILGTAQSVGCNVDGRHP |
..EP.R.R.KQK.N....GN.T.DE.V.I...MRHR..A..LSGT.I.E.LG..Q.VG....G.HP | |
Retrocopy | -PEPARNREKQK<NTEKGGNVTVDETVSIIQHMRHRTAAEDLSGT<ISEVLGAVQPVGYTAPGPHP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .00 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 253 .74 RPM |
SRP021940_testis | 0 .00 RPM | 48 .98 RPM |