RetrogeneDB ID: | retro_cfam_1484 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 32:36217923..36218430(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 68. % |
Parental protein coverage: | 90.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | HPTPAASAMPPKFDPNEIKVVYLRCTGGEVGA-TSALAPKIGPLGLSPK-KVGDDIAKATGDWKGLRITV |
HP...AS.MPPKF...E.KV.YLRC.G.E.GA..SAL...IG.L.LSPK.K.GDD..K..GDWK.LRITV | |
Retrocopy | HPAHSASTMPPKFYLKELKVLYLRCVGPELGA<ISALVLRIGLLDLSPK<KIGDDTTKVFGDWKDLRITV |
Parental | KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEI-VNIARQMRHRSLARELSGTI |
KLTIQNRQ.QIE.VPSASALIIKALK..PRD.KKQ.NIKH.GNITFD.I...I..QMRH.SL.R.LS... | |
Retrocopy | KLTIQNRQIQIEGVPSASALIIKALKKLPRD-KKQRNIKHNGNITFDDI<FHITQQMRHQSLDRGLSRSF |
Parental | KEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
KEILGT..S.GCN.DG.H.HD...DI.SGA.ECPA | |
Retrocopy | KEILGTTGSEGCNIDGSHRHDTV-DIESGAIECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .08 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |