RetrogeneDB ID: | retro_fcat_1676 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:61722114..61722666(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.06 % |
Parental protein coverage: | 96.34 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | RRCNALRSSRIRVHPTPTASTMPPKFDP--NEIKVEYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIA |
RRC..L..S..RV.P...AST.PPKF.P...EIK...LR.T.G.VGATSALAPK..P.GLSP..VGDDIA | |
Retrocopy | RRCYCLQQSPVRVPPAAAASTLPPKFHPEQDEIKLVDLRRTSGGVGATSALAPKLSPTGLSPR*VGDDIA |
Parental | KATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMR |
KA..DWKGL..TVKLTI..R.......P..S...........R...K..N.KHSGN..FDE.VN.A.QMR | |
Retrocopy | KAASDWKGLGVTVKLTIRDRPRLKWYLPPLSCSSKPSRNRGDRKKQK--NTKHSGNVAFDESVNVA*QMR |
Parental | HRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP |
H.SLARELSGTIK..LG.A.SVGCN..G.HP.....DI.SGAV.CP | |
Retrocopy | H*SLARELSGTIKDLLGMARSVGCNTNGYHPQGTTEDIDSGAVGCP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .10 RPM | 388 .12 RPM |
SRP017611_liver | 0 .10 RPM | 219 .37 RPM |