Parental gene:

ENSFCAG00000010302

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:D4:88038517..88042290(-)


>ENSFCAG00000010302
TCGGCTCGGAGGAGGCGACGGTGCAACGCTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAACCGCCTCCACCAT
GCCGCCTAAGTTCGACCCCAACGAGATCAAAGTCGAGTACCTGAGGTGCACCGGTGGTGAGGTCGGTGCTACGTCTGCCC
TGGCCCCCAAGATCGGCCCGCTTGGTCTGTCTCCAAAAAAGGTTGGTGATGACATCGCCAAGGCAACCGGTGATTGGAAG
GGTCTGAGGATTACAGTGAAGCTGACCATTCAGAACAGACAGGCTCAGATTGAAGTGGTACCTTCTGCCTCCGCCCTGAT
TATCAAAGCCCTAAAGGAACCGCCAAGGGACAGAAAGAAGCAGAAAAACATTAAGCACAGTGGAAACATCACTTTTGATG
AGATTGTCAACATTGCCCGACAGATGAGGCACCGATCGTTAGCCAGGGAACTCTCTGGAACCATTAAAGAGATTCTGGGG
ACCGCCCAATCTGTGGGCTGCAATGTTGATGGCCGCCACCCTCATGACATCATAGATGACATCAATAGTGGTGCAGTGGA
ATGTCCAGCTGTA

Library Parental gene expression (RPM)
SRP017611_liver 219 .37 RPM
SRP017611_kidney 388 .12 RPM
SRP017611_brain 96 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016712 ortholog_one2one 15 retrogenes
Canis familiaris ENSCAFG00000020136 ortholog_one2one 31 retrogenes
Cavia porcellus ENSCPOG00000013769 ortholog_one2many 18 retrogenes
Equus caballus ENSECAG00000010622 ortholog_many2many 17 retrogenes
Echinops telfairi ENSETEG00000006941 ortholog_one2many 7 retrogenes
Latimeria chalumnae ENSLACG00000015373 ortholog_one2many 3 retrogenes
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
Myotis lucifugus ENSMLUG00000009551 ortholog_one2many 2 retrogenes
Myotis lucifugus ENSMLUG00000013404 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
Mustela putorius furo ENSMPUG00000013832 ortholog_one2one 34 retrogenes
Otolemur garnettii ENSOGAG00000000597 possible_ortholog 120 retrogenes
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
Sarcophilus harrisii ENSSHAG00000017864 possible_ortholog 8 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000027425 ortholog_one2many 7 retrogenes
Tupaia belangeri ENSTBEG00000006304 possible_ortholog 25 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_35 75.86 60.73
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2. retro_fcat_53 82.93 85.86
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3. retro_fcat_302 66.00 51.31
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4. retro_fcat_352 75.57 90.58
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5. retro_fcat_359 74.85 85.86
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6. retro_fcat_415 55.49 86.91
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7. retro_fcat_455 62.84 94.76
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8. retro_fcat_502 64.38 75.39
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9. retro_fcat_509 71.05 98.95
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10. retro_fcat_638 75.51 50.26
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11. retro_fcat_767 72.02 98.95
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12. retro_fcat_819 69.47 98.43
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13. retro_fcat_902 73.54 98.95
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14. retro_fcat_1078 75.66 97.91
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15. retro_fcat_1115 73.85 99.48
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16. retro_fcat_1118 84.03 61.26
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17. retro_fcat_1149 70.54 67.54
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18. retro_fcat_1206 72.38 53.40
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19. retro_fcat_1276 82.35 52.88
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20. retro_fcat_1288 69.94 90.05
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21. retro_fcat_1298 70.25 62.30
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22. retro_fcat_1376 96.61 61.26
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23. retro_fcat_1482 71.35 99.48
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24. retro_fcat_1527 65.57 94.24
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25. retro_fcat_1637 80.26 79.06
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26. retro_fcat_1638 78.79 68.59
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27. retro_fcat_1676 58.06 96.34
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28. retro_fcat_1854 51.35 56.54
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29. retro_fcat_1873 74.44 92.15
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30. retro_fcat_1977 77.38 86.91
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31. retro_fcat_2009 66.92 67.54
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Download FASTA sequences of all ENSFCAG00000010302 retrocopies