RetrogeneDB ID: | retro_cfam_1597 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:8069997..8070560(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000010515 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 76.96 % |
Parental protein coverage: | 98.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | RRRQRCNCLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDI |
RRRQRCNCL..S.I.V..TPAAS..PPKF.PNEI.V.YLRCTG.E..ATS.LAPK.G.LGLSP.K.GDDI | |
Retrocopy | RRRQRCNCLWLSGIWVRRTPAASTLPPKFNPNEINVMYLRCTGSEASATSVLAPKVGLLGLSPQKFGDDI |
Parental | AKA-TGDWKGLRITVKLTIQNRQAQIE-VVPSASALIIKALKEPPRDRKKQK-NIKHSGNITFDEIVNIA |
AK..T..WKGLRI.VKL.IQNRQAQIE.VVPSAS.LII..LK.PPRDRKKQK.NIK.SGN.TFDE.VNIA | |
Retrocopy | AKG>TSSWKGLRIIVKLIIQNRQAQIE<VVPSASFLIIETLKDPPRDRKKQK<NIKCSGNTTFDETVNIA |
Parental | RQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
.QM...SLAREL.G.IKEILGTAQSV..NVDG.HPHDIIDDIN.GAVECPA | |
Retrocopy | QQMWPQSLARELFGIIKEILGTAQSVDYNVDGHHPHDIIDDINGGAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |