RetrogeneDB ID: | retro_ecab_379 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 16:38875192..38875486(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.63 % |
Parental protein coverage: | 58.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITF |
LSPKK.G..I..ATGDWKGLRITVKLTIQN.QAQIEVVPSASALII.ALKEPPRDRK.Q.NIKH..NITF | |
Retrocopy | LSPKKLGNHITRATGDWKGLRITVKLTIQNQQAQIEVVPSASALIIQALKEPPRDRKEQRNIKHNRNITF |
Parental | DEIVNIARQM-RHRSLARELSGTIKEIL |
D.IVN.A.QM..H.SLARELSGTIKE.L | |
Retrocopy | DKIVNLAQQMGYHLSLARELSGTIKETL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .03 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 253 .74 RPM |
SRP021940_testis | 0 .58 RPM | 48 .98 RPM |