RetrogeneDB ID: | retro_cpor_342 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_13:40967868..40968398(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000023106 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCPOG00000013769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.4 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVG-DDIAKATGDW |
LR.....VH.T.AASTM.PKFDPN.I.VVYLRCT....G...........LGLSPKK.G.DDI.KATGD. | |
Retrocopy | LRCNFLSVHLTQAASTMLPKFDPNRIRVVYLRCTN---GEVGTTSAQTLTLGLSPKKEG>DDIVKATGDQ |
Parental | KGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRK-KQ-KNIKHSGNITFDEIVNIARQMRHRSL |
KGLRITVKLTIQN.QAQ.EV.PSASAL..KALKEPPR.RK.KQ.KNIKHSGNI.FDEIVNIA.QM.H..L | |
Retrocopy | KGLRITVKLTIQNGQAQTEVMPSASALVVKALKEPPRERK<KQ<KNIKHSGNIAFDEIVNIAQQMQHQIL |
Parental | ARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINSGAVECPA |
ARELS..IKE.LGTAQ.VG.NV.N...HDIIDDIN.G...C.A | |
Retrocopy | ARELSRIIKETLGTAQTVGYNVENPYSHDIIDDINNGTGKCTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 202 .78 RPM |
SRP017611_liver | 0 .00 RPM | 146 .95 RPM |
SRP040447_lung | 0 .00 RPM | 273 .72 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 242 .39 RPM |