RetrogeneDB ID: | retro_ecab_973 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:57763310..57763759(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.55 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQ |
.PPKFDP..IKVVYLR...GEV.A.S......GPLGLSPK.VGDDIAKA.GDWKGLRI.V.LT.QNRQAQ | |
Retrocopy | IPPKFDPKNIKVVYLR*ICGEVSAMSV----LGPLGLSPKQVGDDIAKAAGDWKGLRIAVELTVQNRQAQ |
Parental | IEVVP-SASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSV |
.EV.P.SASALII..LKEPPRDR.KQKNIK.SGN.TFD...NIA.QM.H..LARELSG.IKEILGTAQSV | |
Retrocopy | TEVAP<SASALIITVLKEPPRDRRKQKNIKLSGNTTFDDTINIAQQMWH*WLARELSGIIKEILGTAQSV |
Parental | GCNVDGRHPHDVIDD |
GC.V.G.H.H..IDD | |
Retrocopy | GCSVNGCHLHNIIDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .05 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .00 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 253 .74 RPM |
SRP021940_testis | 0 .00 RPM | 48 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1880 |
Gorilla gorilla | retro_ggor_1377 |
Canis familiaris | retro_cfam_1880 |