RetrogeneDB ID: | retro_cfam_706 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 16:34114597..34115101(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 68.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGD-WKGLRITVKLTIQ-NRQ |
MPP.F.PN.IKVVYLRCT.GEV.ATSAL.....P...SPK.VGDDI.KATGD..KGLRI.VKLT...NRQ | |
Retrocopy | MPPTFGPNKIKVVYLRCTSGEVDATSALG*RSAPWVFSPKNVGDDITKATGD>SKGLRIIVKLTFR<NRQ |
Parental | AQIEVVPSA-SALIIKALKE-PPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARE---LSGTIKEIL |
AQIEVVPSA.SALIIKALK....R...KQKNI....N.TFD.IVN.ARQM.H.S.ARE...L......IL | |
Retrocopy | AQIEVVPSA<SALIIKALKD>TKR*KLKQKNIMDRENVTFDGIVNTARQMQHQS*ARELSSLEPLKRSIL |
Parental | GTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
GT.QS.GCNVD.RHP.DI.DD.NSGAVE.PAS | |
Retrocopy | GTGQSMGCNVDDRHPNDITDDNNSGAVESPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 305 .54 RPM |
SRP017611_brain | 0 .24 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .07 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |