RetrogeneDB ID: | retro_ecab_475 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 19:34821932..34822340(-) | ||
Located in intron of: | ENSECAG00000007589 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.86 % |
Parental protein coverage: | 83.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LAPKIGPLGLSPKKV-GDDIAKATGDWKGLRITVKLTIQNRQAQ-IEVVPSASAL-IIKALKEPPRDRKK |
L.P.IGPLGLSPKK..GDDIAKAT...KG.RI..KLTIQ..Q...IEVV.SASAL..IKAL.EPP.DR.K | |
Retrocopy | LVPQIGPLGLSPKKL<GDDIAKATSNRKGSRIIAKLTIQKHQLR<IEVVLSASAL<VIKALREPPGDRNK |
Parental | QKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGAVECPA |
QKNI..SGN.TFDEIVNIA.Q..H..LAREL.GTI...LGTAQSVGCNV.G.HP.D.IDDIN.GAVECPA | |
Retrocopy | QKNINLSGNLTFDEIVNIA*QIQHQTLARELPGTITRVLGTAQSVGCNVEGHHPCDIIDDINSGAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .00 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .10 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 253 .74 RPM |
SRP021940_testis | 0 .58 RPM | 48 .98 RPM |