RetrogeneDB ID: | retro_itri_790 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393322.1:4463946..4464355(-) | ||
Located in intron of: | ENSSTOG00000016301 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSTOG00000027425 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 56.16 % |
Parental protein coverage: | 86.59 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | AASTMPPKFDPNEIKVPKKVGDD-IAKATGDWKGLRITVKLTIQ-NRQAQIEVVPSASALIIKA-LKEPP |
A.ST..P...P.....PK.V.D..IAKATGD...LRI.VKLT....R.A.IE...S.S.LI.KA.LKE.. | |
Retrocopy | AMSTLDPEIAPLN-QPPKQVDDS<IAKATGD*TELRIVVKLTFR<DR*ALIEA--STSTLIFKA<LKESR |
Parental | RDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG- |
RDRKK.KN.KH..N.TF.E..NIA.Q.....LA.ELSGT.KE..GTAQS.G...DG.HP.DI.DD..SG. | |
Retrocopy | RDRKK*KNFKHR-NMTFYETSNIAQQIWQ*HLAKELSGTLKELSGTAQSLG*DADGHHPSDILDD-SSG> |
Parental | AVECPA |
.V.CPA | |
Retrocopy | CVGCPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |