RetrogeneDB ID: | retro_cfam_1796 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:51956971..51957387(+) | ||
Located in intron of: | ENSCAFG00000020062 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 63.38 % |
Parental protein coverage: | 72.63 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | ARRRQRCNCLRSSRIRVHPTPAASAMPP-KFDPNEIKVVYLRCTGGEVGATSALAPKIGPL-GLSPKKVG |
A.R....NCL....IRVH.TPAA..M...KFDPNEIK..YLRC...EV.A.S.L..KIGPL.GLSPK..G | |
Retrocopy | AQRMGSYNCLW*IGIRVHLTPAATTMLS>KFDPNEIKILYLRCADAEVSARSTLPLKIGPL<GLSPKTFG |
Parental | DDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIK-ALKEPPRDRKKQKNIK-HSGNITFDEIVN |
D.I..A..DWK.LRIT.KLTI.NR.AQI.VVP.AS.LI.K.A.KEP.RDRK.QKNIK..SGN..FD..VN | |
Retrocopy | DSITEAADDWKYLRITMKLTILNR*AQI*VVPFASSLISK<AIKEPQRDRKTQKNIKINSGNTIFDDTVN |
Parental | IA |
.A | |
Retrocopy | LA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |