RetrogeneDB ID: | retro_cfam_1558 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 34:34485406..34485847(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000013376 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 69.13 % |
Parental protein coverage: | 78.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RRRQRCNCLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDI |
RRR.RCN....S...V..TPA.S.M.P.F.PN.IKV.YL.C..G..GA.S.LAPK.GPL.LSPKKVGDDI | |
Retrocopy | RRR*RCNYVWPSSFWVLLTPATSTMTPQFNPNKIKVIYLSCPRGKAGAVSVLAPKMGPLSLSPKKVGDDI |
Parental | AKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQM |
.KATGDWKGLR.T.KLT.QNRQAQ.E.VPS.SAL...AL.E.PRDRK..KNIKHSGNIT.DEIVNIA.QM | |
Retrocopy | TKATGDWKGLRMTAKLTVQNRQAQMEMVPSPSALMRRALQELPRDRK--KNIKHSGNITLDEIVNIAPQM |
Parental | RHRSLAREL |
...SLAR.L | |
Retrocopy | QY*SLARRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 305 .54 RPM |
SRP017611_brain | 0 .08 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .13 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |