RetrogeneDB ID: | retro_fcat_415 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:13610050..13610555(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.49 % |
Parental protein coverage: | 86.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | STMPPKFDPNEIKVEYLRCTGGEVGATSALAP-KIGPLGLSPKK-VGDDIAKATGDWKGLRIT-VKLTIQ |
S.M.PKF.PNEIK..YLRCT..EV.A.S.....KI.PL..SPKK.VG.D..K..GDWK..RI..VKLTIQ | |
Retrocopy | SIMSPKFNPNEIKFIYLRCTSEEVSASSERRS<KISPLDPSPKK>VGNDTTKTNGDWKDMRIR<VKLTIQ |
Parental | NRQAQIEVVPSASALIIKALKEPPRDRKK--QKNIKHSGNITFDEIVNIARQMRHRSLARE-LSGTIKEI |
..........S......K.L.......K............ITFDE..N.A.QMRHRSLA.E.L..TIKEI | |
Retrocopy | AQNEMVPSASSLTIKPLKELPRQKKVEKQ*VAYSLLSTAGITFDETINTA*QMRHRSLATE>LPRTIKEI |
Parental | LGT-AQSVGCNVDGRHPHDIIDDINSGAVECPA |
LGT..QS.GCNV.G.HPH.IIDDINSGAVECPA | |
Retrocopy | LGT>TQSMGCNVNGHHPHGIIDDINSGAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |