RetrogeneDB ID: | retro_cfam_1880 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:52598493..52599023(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 66.85 % |
Parental protein coverage: | 95.26 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | RRQRCNCLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGG-EVGATSALAPKIGPLGLSPKKVGDDI |
RR..CN.L..S.IRVHPTPAASAMPP.FD..EIKVVYL.CT.G.EV.A.S......GPLGLSPK.V.DDI | |
Retrocopy | RRSTCNFL*LSCIRVHPTPAASAMPPTFDLKEIKVVYLECTVG<EVSAMSV----LGPLGLSPKTVDDDI |
Parental | AKATGDWKGLRITVK-LTIQNRQAQIEVVPSASALIIKALKEPP-RDRKKQKNIKHSGNITFDEIVNIAR |
AKA.GDW.GLRI....LTI.NR.AQI...P.ASALIIK.L.E.P.R.RKKQKNIK.SGN.TFD..V..A. | |
Retrocopy | AKAAGDWSGLRIAGA<LTILNRLAQIDMAPPASALIIKVLEELP>RGRKKQKNIKLSGNTTFDDTVSVA* |
Parental | QMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSG |
...H.SLARELSGTI.EIL.T..SVGCNVDG....D.I.D.NSG | |
Retrocopy | *AQH*SLARELSGTIEEILRTVRSVGCNVDGCCLRDLIGDSNSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1880 |
Gorilla gorilla | retro_ggor_1377 |
Equus caballus | retro_ecab_973 |