RetrogeneDB ID: | retro_ecab_605 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 23:22602642..22603132(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.19 % |
Parental protein coverage: | 98.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | PKFDPNEIKVVYLRCTGGEVGATSALAPKIGP-LGLSPKKV-GDDIAKATGDWKGLRITVKLTIQNRQ-A |
P.F.P.EIKVV..RCTGGEV.ATSALAPKIGP.LGLSPKKV.G.DIAKA.GDWK.L.ITVKLTIQ.RQ.. | |
Retrocopy | PEFNPSEIKVVNPRCTGGEVSATSALAPKIGP<LGLSPKKV>GHDIAKACGDWKDLKITVKLTIQHRQ<S |
Parental | QIEVVPSASALIIKALKEPPRDRKKQKNIKH-SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQS |
QIEVV.SASAL.IKAL..PPRDRKKQK...H..GN.TFD.IVNIA.QM.H.SL.RELSGT..EIL..AQS | |
Retrocopy | QIEVVRSASALVIKALQGPPRDRKKQKDFEHFCGNSTFDGIVNIAGQMWH*SLVRELSGTVEEILRLAQS |
Parental | VGCNVDGRH-PHDVIDDINNGAVECPAS |
VGC.VDG.H..HD.IDDIN.GAVECPAS | |
Retrocopy | VGCSVDGHH<SHDIIDDINSGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .03 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 253 .74 RPM |
SRP021940_testis | 0 .00 RPM | 48 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4121 |
Gorilla gorilla | retro_ggor_2768 |
Pongo abelii | retro_pabe_3482 |