RetrogeneDB ID: | retro_ecab_1024 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:41120241..41120645(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.19 % |
Parental protein coverage: | 83.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQI |
PPKF.P..IKV.YLRCT.GEVGA.S.LAPK..PL.LSPKK.GD..A..T..WKGLRI..KLTIQN.QAQI | |
Retrocopy | PPKFNPSDIKVMYLRCTSGEVGAASTLAPKFNPLSLSPKKPGD--ANETSNWKGLRIRPKLTIQNQQAQI |
Parental | EVVPS-ASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQS |
EVVPS..SALIIK.LKE.PRDRKKQ.NIKH.GN..FD..V.IA.QM.H.SLAREL.GT.KEI.GTAQS | |
Retrocopy | EVVPS<SSALIIKDLKELPRDRKKQRNIKHNGNVMFDKTVSIA*QMWH*SLARELLGTVKEIRGTAQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .05 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 253 .74 RPM |
SRP021940_testis | 0 .00 RPM | 48 .98 RPM |