RetrogeneDB ID: | retro_cfam_1591 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:26780303..26780874(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 70.62 % |
Parental protein coverage: | 99.47 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ARRRQRCNCLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVG-D |
ARRRQR.NCL.SS..RVHPT.AAS.M.P.....EI.......TGG..GAT..LAPKIG.L.L.PKKVG.. | |
Retrocopy | ARRRQRGNCLGSSCTRVHPTAAASTMLPRSKLHEIEAC-I*DTGGSAGATCFLAPKIGQLRLPPKKVG<F |
Parental | DIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQK---NIKHSGNITFDEIVN |
D..KAT.DWKGLR.TVK.T..NRQAQIEV.P.AS.LIIKALK..PRDRKKQK....IKHSGNITFDEIVN | |
Retrocopy | DFTKATSDWKGLRSTVKQTLHNRQAQIEVGPFASTLIIKALKDLPRDRKKQKQNKDIKHSGNITFDEIVN |
Parental | IARQMRHRSLARELSGTIKEILGTAQSVGC-NVDGRHPHDIIDDINSGAVECPA |
IA.QM...SL..ELSGTIKEILGTAQSVGC..VDG.HPHD.I...NSGAVECPA | |
Retrocopy | IA*QMWPHSLP*ELSGTIKEILGTAQSVGC<HVDGHHPHDVIGGLNSGAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |