RetrogeneDB ID: | retro_ecab_699 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 29:5959522..5959936(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.57 % |
Parental protein coverage: | 83.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LAPKIGPLGLSPKK-VGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQK |
L.PK.G.L.LSPKK.V.DDI.KAT.DWKGLRITVKLTIQN.Q.QIE.V.SASALII.AL.EPPRD.KKQK | |
Retrocopy | LVPKTGLLVLSPKK>VFDDITKATSDWKGLRITVKLTIQNQQVQIEAVFSASALIITALQEPPRDQKKQK |
Parental | NIKHSGNITFDEIVNIARQMRHRSLARE-LSGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGAVECPAS |
N.KHSGNITFDEIVNIA.QM...SLA...LSGTI.EILGTAQSVG.NVDG.HPHD.IDDI..GAV.CPAS | |
Retrocopy | NVKHSGNITFDEIVNIA*QMWCQSLAKD<LSGTIEEILGTAQSVG*NVDGHHPHDIIDDIKSGAVGCPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .24 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .00 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .11 RPM | 253 .74 RPM |
SRP021940_testis | 0 .90 RPM | 48 .98 RPM |