RetrogeneDB ID: | retro_cfam_76 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:95324089..95324587(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000002166 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 93.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQ |
MP.KFDPNEIKVVYLRCTGGEVGATSALA.KI.PLGLSPKKVGDDIAKAT.DWKGLRITVKLTIQNRQAQ | |
Retrocopy | MPLKFDPNEIKVVYLRCTGGEVGATSALALKISPLGLSPKKVGDDIAKATSDWKGLRITVKLTIQNRQAQ |
Parental | IEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVG |
IEVVPSASALIIKALKEPPRDRKKQKNIKHSGN.TFDEIVNIA.QM.H.SLARELSGTIKEILGT.QSVG | |
Retrocopy | IEVVPSASALIIKALKEPPRDRKKQKNIKHSGNNTFDEIVNIAQQMQHQSLARELSGTIKEILGTGQSVG |
Parental | CNVDGRHPHDIIDDINSGAVECPAS |
CNVDG.HPHDIIDDINSGAVECPAS | |
Retrocopy | CNVDGCHPHDIIDDINSGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .59 RPM | 791 .32 RPM |
SRP017611_liver | 0 .22 RPM | 227 .18 RPM |