RetrogeneDB ID: | retro_itri_840 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393331.1:10828356..10828730(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSTOG00000027425 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 77.17 % |
Parental protein coverage: | 76.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDE |
PKKVG.DIAKAT..W.GL.I.VKLTIQNR.AQIEVVPS.S.LIIK.LKEPPRDRK....I.HSGNI.F.E | |
Retrocopy | PKKVGNDIAKATDYWMGLKIIVKLTIQNR*AQIEVVPSVSGLIIKSLKEPPRDRK-XXXIEHSGNISFNE |
Parental | IVNIARQMRHR-SLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
IVNI.RQM.H..SLARELSGTI.EILGT.QSVGCNVDG.HP..II.DI.SG.VECPA | |
Retrocopy | IVNIVRQMCHH<SLARELSGTIMEILGTDQSVGCNVDGHHPYEIIYDISSGTVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |