RetrogeneDB ID: | retro_fcat_1288 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:95343866..95344383(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.94 % |
Parental protein coverage: | 90.05 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | RRRRRCNALRSSRIRVHPTPTASTMPPKFDPNEIKVEYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDI |
RRR.R...L..S...V.PT....T.PPK....EIKV.YLRC..GE.GA.SALAPK.GPLGLSPKK.GDDI | |
Retrocopy | RRR*RFSCLQLS*FWVPPTAATPTVPPKVNLSEIKVMYLRCICGEAGALSALAPKTGPLGLSPKKFGDDI |
Parental | AKATGDWKGLRIT-VKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQ |
.KAT.DWKGLRIT...L.I...QAQIEVV.SASALIIKALKEPPRDRKK.KNIKHSGNITFDE.VNIA.. | |
Retrocopy | IKATSDWKGLRIT>TLLAIRDPQAQIEVVSSASALIIKALKEPPRDRKK*KNIKHSGNITFDETVNIAQH |
Parental | MRHRSLARELSGTIKEILGTAQSVGCNVDGRHP |
M.H.SL.R.LSGT..EILGT.QS..C..DG.HP | |
Retrocopy | MQH*SLTRDLSGTMEEILGTSQSIACTFDGHHP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |