RetrogeneDB ID: | retro_ecab_1027 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:50639306..50639636(-) | ||
Located in intron of: | ENSECAG00000020172 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70. % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAREL |
.RITVKLT.QNRQAQ.E.V.SASAL.IK..KEP.RD.K.QK.IKH..N..F.EIVNIA.Q..H.SLAREL | |
Retrocopy | VRITVKLTVQNRQAQTEGVSSASALTIKNVKEPTRDGKRQKDIKHTNNSNFHEIVNIA*QTQHQSLAREL |
Parental | SGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGAVECPAS |
SGTIKEILGTAQ...CN.DG.HPHD.I.DIN...V.CP.S | |
Retrocopy | SGTIKEILGTAQFASCNADGCHPHDIINDINSRMVKCPTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .00 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 253 .74 RPM |
SRP021940_testis | 0 .00 RPM | 48 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3363 |