RetrogeneDB ID: | retro_cfam_1151 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:34600057..34600424(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 57.6 % |
Parental protein coverage: | 64.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ARRRQRCNCLRSSRIRVHPTP-AASAMPPKFDPNEIKV-VYLRCTGGEVGATSALAPKIGPLGLSPKKVG |
A.R.QRCN.L.SS.I..HPTP.A....P....P.......YLR....EV.A.S.LAPKI.......KK.G | |
Retrocopy | AQRKQRCNYLQSSQIQAHPTPDASNMLPT*VQPQPDQT<SYLRYASEEVDAMSELAPKISS*ICHRKKDG |
Parental | DDIAKA-TGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKN |
DDI.KA.TGD.KG.RITVKLTIQN..AQ.EVVPSASA.IIK..KE.P..RK..KN | |
Retrocopy | DDITKA<TGDRKGMRITVKLTIQNKKAQTEVVPSASAPIIKDFKERPIGRKQEKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .07 RPM | 227 .18 RPM |