RetrogeneDB ID: | retro_cfam_1141 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:11599776..11600296(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 73.3 % |
Parental protein coverage: | 90.53 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | RRQRCNCLRSSRIRVHPTPAASAMPPKFDPNEIK-VVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDI |
RR.R.N.L.S..I.VH.TP..S.M..KF.PNEIK.V.YLRCT.GEV....ALAPKIG.LGLSP.KVGDDI | |
Retrocopy | RR*RFNRLGSP*IQVHLTPSTSTMALKFGPNEIK<VMYLRCTSGEVRTMPALAPKIGHLGLSPDKVGDDI |
Parental | AKATGDWKGLRITV-KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQ |
AKATGDW.GLR.T..KLTIQNRQ..IEV.PSASALIIKALKE.P.DRKKQKNIK.SGNITFD.IVNI..Q | |
Retrocopy | AKATGDWNGLRMTG<KLTIQNRQDRIEVIPSASALIIKALKELPTDRKKQKNIKYSGNITFDKIVNIN*Q |
Parental | MRHRSL-ARELSGTIKEILGTA-QSVGCNVDGRHPH |
M.H.SL.AR.LSGTI.EIL.TA..SVGCNVDG...H | |
Retrocopy | MWHQSLVARKLSGTIREILRTA**SVGCNVDGHQ*H |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |