Parental gene:

ENSECAG00000010622

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:25:30922686..30926581(-)


>ENSECAG00000010622
ATGCCGCCCAAGTTCGACCCCAACGAGATCAAAGTCGTGTACCTGAGGTGCACCGGTGGGGAGGTCGGTGCCACGTCTGC
CCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAGGTGGGCGATGACATCGCCAAGGCAACTGGTGATTGGA
AGGGTCTGAGGATCACTGTGAAACTGACGATCCAGAACCGACAGGCTCAGATTGAGGTGGTACCTTCTGCCTCTGCCCTG
ATCATCAAAGCACTCAAGGAACCACCAAGAGACCGAAAGAAGCAGAAAAACATAAAGCACAGTGGAAACATCACCTTTGA
TGAGATTGTCAACATTGCTCGACAGATGCGGCACCGGTCATTGGCCAGAGAACTCTCTGGAACCATTAAAGAGATCCTGG
GGACTGCCCAGTCTGTGGGCTGCAACGTTGATGGTCGCCACCCTCATGATGTCATCGATGACATCAACAATGGTGCTGTG
GAATGCCCAGCTAGTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 253 .74 RPM
SRP021940_embryo 157 .99 RPM
SRP021940_cerebellum 64 .55 RPM
SRP021940_testis 48 .98 RPM
SRP021940_placental_villous 118 .31 RPM
SRP021940_articular_cartilage 374 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016712 ortholog_many2many 15 retrogenes
Canis familiaris ENSCAFG00000020136 ortholog_one2many 31 retrogenes
Cavia porcellus ENSCPOG00000013769 ortholog_one2many 18 retrogenes
Echinops telfairi ENSETEG00000006941 ortholog_one2many 7 retrogenes
Felis catus ENSFCAG00000010302 ortholog_many2many 31 retrogenes
Latimeria chalumnae ENSLACG00000015373 ortholog_one2many 3 retrogenes
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
Myotis lucifugus ENSMLUG00000009551 ortholog_many2many 2 retrogenes
Myotis lucifugus ENSMLUG00000013404 ortholog_many2many 1 retrogene
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
Mustela putorius furo ENSMPUG00000013832 ortholog_many2many 34 retrogenes
Otolemur garnettii ENSOGAG00000000597 possible_ortholog 120 retrogenes
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
Sarcophilus harrisii ENSSHAG00000017864 possible_ortholog 8 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000027425 ortholog_one2many 7 retrogenes
Tupaia belangeri ENSTBEG00000006304 ortholog_one2many 25 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_157 52.21 80.00
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2. retro_ecab_335 83.17 60.61
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3. retro_ecab_379 81.63 58.79
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4. retro_ecab_457 57.55 63.64
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5. retro_ecab_475 72.86 83.03
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6. retro_ecab_605 76.19 98.79
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7. retro_ecab_666 56.86 60.61
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8. retro_ecab_679 80.49 99.39
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9. retro_ecab_699 78.57 83.64
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10. retro_ecab_708 74.07 63.64
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11. retro_ecab_843 77.71 99.39
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12. retro_ecab_895 67.55 88.48
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13. retro_ecab_967 67.83 67.27
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14. retro_ecab_973 73.55 93.33
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15. retro_ecab_1024 73.19 83.03
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16. retro_ecab_1027 70.00 66.67
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17. retro_ecab_1119 73.78 98.18
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Download FASTA sequences of all ENSECAG00000010622 retrocopies