RetrogeneDB ID: | retro_cfam_1143 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:22499763..22500092(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | RVHPTPA-ASAMPP-KFDPNEIKVVYLRCTGGEVGATSALAP-KIGPLGLSPK-KVGDDIAKATGDWKGL |
RVHPTPA..S..PP.KF.P...K.....C..G.VG.TSALAP.KIG.L.LSPK.KV.D.I...T...KGL | |
Retrocopy | RVHPTPAVSSMTPP<KFNPTKSKL----CARGKVGVTSALAP<KIGSLSLSPK<KVDDHITEVTRG*KGL |
Parental | RITVKLTIQNRQAQIEV-VPSASALIIKALKEPPRDRKKQKNIKHSGNI |
RITV.LTIQ.RQAQ.....P..S..II.ALKE....RK..KN.K.S.NI | |
Retrocopy | RITVELTIQSRQAQTDR<APAVSSSIITALKEQGTHRKT*KNVKYSMNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |