RetrogeneDB ID: | retro_ecab_666 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 26:26266262..26266560(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.86 % |
Parental protein coverage: | 60.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSG |
I.V.L..QN...Q.EV.PS.S..IIKAL.E.PRDRK.....KH.GNI.F...V....QM..RSL.RE.S. | |
Retrocopy | IPVRLIHQNGKTQNEVAPSSSSPIIKALGESPRDRKEPLHMKHNGNIAFYDLVKST*QMKRRSLSREFSS |
Parental | TIKE-ILGTAQSVGCNVDG-RHPHDVIDDINN |
.IK..ILGTAQ.VGCN..G..HPHD..DDIN. | |
Retrocopy | VIKQ<ILGTAQCVGCNANG<LHPHDIQDDINS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .00 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 253 .74 RPM |
SRP021940_testis | 0 .06 RPM | 48 .98 RPM |