RetrogeneDB ID: | retro_fcat_509 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:130715131..130715697(-) | ||
Located in intron of: | ENSFCAG00000004675 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.05 % |
Parental protein coverage: | 98.95 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SARRRRRCNALRSSRIRVHPTPTASTMPPKFDPNEIKVEYLRCTGGEVGATSALAPKIGPLGLSPKKVGD |
SA.RRRRCN.L.SSRI.VHPTP.AST.PPKF.P..I.V.YLR.T.GEV.ATSAL.PK..P.....KKV.D | |
Retrocopy | SAWRRRRCNSLQSSRIQVHPTPAASTTPPKFNPSKI*VVYLRYTSGEVSATSALTPKTAP*VCLQKKVAD |
Parental | DIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIAR |
DI...T.D.KGLR.T.KLTIQNRQ..IE.VPSAS.LII.ALKEPPR.RKKQK...HS..ITFDEIVNIA. | |
Retrocopy | DISRVTCDQKGLRLTMKLTIQNRQTRIEMVPSASSLIIEALKEPPRERKKQKTVTHSRSITFDEIVNIAQ |
Parental | QMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDD-INSGAVECP |
.M.H.SLARELSGTI.EILGT.QS.G.NV.G.HPHDI.D...NSGAVECP | |
Retrocopy | *MQHHSLARELSGTI*EILGTVQSMGGNVHGHHPHDIRDA<MNSGAVECP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |