RetrogeneDB ID: | retro_itri_833 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393330.1:5015122..5015500(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSTOG00000027425 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 76.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDE |
PKK.GDDIAKATGDWKGLRITVKLTI..RQAQIEVVPSA.ALIIK.LKEPPRDRKKQKNIKHS.NIT.DE | |
Retrocopy | PKKFGDDIAKATGDWKGLRITVKLTILDRQAQIEVVPSAFALIIKTLKEPPRDRKKQKNIKHSENITLDE |
Parental | IVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
IVN.A.QM.HRSLARELSGTIKE.LGTAQSVGCNVDG.HPHDIIDD.NSG.VECPA | |
Retrocopy | IVNTA*QMHHRSLARELSGTIKETLGTAQSVGCNVDGCHPHDIIDDFNSGTVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |