RetrogeneDB ID: | retro_cfam_1166 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 25:23771630..23772168(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 76.67 % |
Parental protein coverage: | 93.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SSRIRVHPTPAASAMPPKFDPNEIKVVYL-RCTGG-EVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK |
SS...VHPTPAAS.M.PK.....IK...L..CT...EVGA.SALAPKIG.LGLSPK..GDDIAKA.GD.K | |
Retrocopy | SSVAWVHPTPAASTMLPKLNSVAIKLINL>QCTTSREVGAMSALAPKIGGLGLSPKTFGDDIAKAAGDGK |
Parental | GLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARE |
GLR.TVKLTIQNRQAQIEVVPSA.AL..KALKEPPRDRK.QKNIKH.G.ITFDEIVNIARQM.H.SLARE | |
Retrocopy | GLRMTVKLTIQNRQAQIEVVPSAAALLVKALKEPPRDRK*QKNIKHRGHITFDEIVNIARQMWHHSLARE |
Parental | LSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
LSG.IKEILG.AQ.VGC.VD..HPHDI.DDI..GAVECPA | |
Retrocopy | LSGIIKEILGAAQPVGCDVDHSHPHDIRDDIHGGAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |