RetrogeneDB ID: | retro_cpor_990 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_38:7417325..7417562(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBIZ | ||
Ensembl ID: | ENSCPOG00000005819 | ||
Aliases: | None | ||
Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62978] |
Percent Identity: | 88.61 % |
Parental protein coverage: | 50.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
M.IFVKT.TGKTI..E.EP.DTIENVKAKIQDKEGIPPDQQRLIFA..QLEDGRTLSDYNIQKESTLHLV | |
Retrocopy | MPIFVKTFTGKTIIHETEPLDTIENVKAKIQDKEGIPPDQQRLIFAATQLEDGRTLSDYNIQKESTLHLV |
Parental | LRLRGGAKK |
LRLRG.AKK | |
Retrocopy | LRLRGSAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 139 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 181 .95 RPM |
SRP017611_liver | 0 .00 RPM | 119 .39 RPM |
SRP040447_lung | 0 .00 RPM | 178 .79 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 156 .32 RPM |