Parental gene:

RPS27A, ENSEEUG00000002329

Aliases:None
Description:ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_4685:41165..42449(+)


>ENSEEUG00000002329
ATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTCAGATACTATAGAGAATGTGAA
AGCCAAGATCCAGGATAAAGGCATTCCTCCTGACCAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTA
CTCTGTCGGACTACAACATCCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTTCGTGGTGGTGCTAAAAGGAAGAAG
AAGTCTTACACCACTCCGAAGAATAAGCATAGAAAGGGTAAACTGGCAGTCCTGAAATACTACAAG

Library Parental gene expression (RPM)
SRP017611_liver 82 .64 RPM
SRP017611_kidney 112 .71 RPM
SRP017611_brain 59 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004017 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000023471 possible_ortholog 3 retrogenes
Callithrix jacchus ENSCJAG00000010052 possible_ortholog 5 retrogenes
Cavia porcellus ENSCPOG00000005819 possible_ortholog 7 retrogenes
Dasypus novemcinctus ENSDNOG00000004813 ortholog_one2one 12 retrogenes
Dipodomys ordii ENSDORG00000006291 ortholog_one2one 11 retrogenes
Gorilla gorilla ENSGGOG00000007678 possible_ortholog 9 retrogenes
Loxodonta africana ENSLAFG00000023133 ortholog_one2one 2 retrogenes
Myotis lucifugus ENSMLUG00000017064 possible_ortholog 10 retrogenes
Myotis lucifugus ENSMLUG00000029449 possible_ortholog 1 retrogene
Macaca mulatta ENSMMUG00000015563 possible_ortholog 8 retrogenes
Monodelphis domestica ENSMODG00000001819 possible_ortholog 3 retrogenes
Oryctolagus cuniculus ENSOCUG00000003613 possible_ortholog 10 retrogenes
Pongo abelii ENSPPYG00000025871 possible_ortholog 1 retrogene
Pan troglodytes ENSPTRG00000011928 possible_ortholog 1 retrogene
Rattus norvegicus ENSRNOG00000004426 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000009566 possible_ortholog 5 retrogenes
Tupaia belangeri ENSTBEG00000004626 ortholog_one2one 95 retrogenes
retro_tbel_1019, retro_tbel_1022, retro_tbel_1057, retro_tbel_1058, retro_tbel_106, retro_tbel_1081, retro_tbel_1086, retro_tbel_1090, retro_tbel_1134, retro_tbel_1255, retro_tbel_1385, retro_tbel_1403, retro_tbel_1459, retro_tbel_1493, retro_tbel_1565, retro_tbel_1566, retro_tbel_157, retro_tbel_1584, retro_tbel_1606, retro_tbel_1623, retro_tbel_1673, retro_tbel_1678, retro_tbel_1760, retro_tbel_1825, retro_tbel_1863, retro_tbel_1902, retro_tbel_1946, retro_tbel_1952, retro_tbel_2067, retro_tbel_2119, retro_tbel_2122, retro_tbel_2123, retro_tbel_2238, retro_tbel_2354, retro_tbel_2408, retro_tbel_2605, retro_tbel_2671, retro_tbel_2739, retro_tbel_283, retro_tbel_2913, retro_tbel_2939, retro_tbel_2952, retro_tbel_3056, retro_tbel_3119, retro_tbel_3120, retro_tbel_3125, retro_tbel_3180, retro_tbel_3183, retro_tbel_3213, retro_tbel_3258, retro_tbel_3260, retro_tbel_3283, retro_tbel_3389, retro_tbel_3446, retro_tbel_3480, retro_tbel_3481, retro_tbel_3505, retro_tbel_3576, retro_tbel_3595, retro_tbel_3621, retro_tbel_3649, retro_tbel_3665, retro_tbel_3831, retro_tbel_3839, retro_tbel_3840, retro_tbel_3874, retro_tbel_3920, retro_tbel_396, retro_tbel_3977, retro_tbel_4021, retro_tbel_4053, retro_tbel_4133, retro_tbel_4149, retro_tbel_4224, retro_tbel_426, retro_tbel_4284, retro_tbel_4305, retro_tbel_4313, retro_tbel_4474, retro_tbel_4484, retro_tbel_4498, retro_tbel_4499, retro_tbel_4502, retro_tbel_4504, retro_tbel_4547, retro_tbel_4554, retro_tbel_4565, retro_tbel_4628, retro_tbel_703, retro_tbel_709, retro_tbel_763, retro_tbel_843, retro_tbel_866, retro_tbel_871, retro_tbel_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_58 67.16 63.73
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2. retro_eeur_72 82.19 70.59
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3. retro_eeur_127 91.51 100.00
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4. retro_eeur_143 73.77 58.82
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5. retro_eeur_193 82.19 70.59
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6. retro_eeur_283 66.35 96.08
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7. retro_eeur_289 81.43 68.63
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8. retro_eeur_308 72.41 54.90
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9. retro_eeur_629 76.62 73.53
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Download FASTA sequences of all ENSEEUG00000002329 retrocopies