RetrogeneDB - Parental gene ENSCPOG00000005819 details

							
>ENSCPOG00000005819
ATGCAGATTTTCGTAAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAGCCCTCGGACACTATAGAAAATGTAAA

GGCCAAGATCCAGGATAAGGAAGGCAAGAGAATTCCTCCTGATCAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAG

ATGGACGCACTTTGTCTGATTACAACATTCAAAAGGAGTCCACCCTTCATCTTGTACTGAGACTCCGTGGTGGTGCTAAG

AAAAGGAAGAAGAAGTCTTACACCACTCCCAAAAAGAATAAGCATAAGAGAAAGAAGGTCAAGTTGGCAGTTCTCAAATA

CTATAAGGTGGATGAAAATGGCAAAATTAGTCGTCTTCGTCGAGAGTGCCCCTCAGATGAATGTGGTGCTGGAGTTTTTA

TGGCAAGCCACTTTGATAGACATTATTGTGGCAAATGCTGTCTGACTTACTGCTTCAACAAACCAGAAGACAAGTAA

Library	Parental gene expression (RPM)
SRP017611_liver	119 .39 RPM
SRP017611_kidney	181 .95 RPM
SRP017611_brain	139 .13 RPM
SRP040447_lung	178 .79 RPM
SRP040447_skeletal_muscle	156 .32 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000004017	possible_ortholog	5 retrogenes	retro_amel_1565, retro_amel_175, retro_amel_598, retro_amel_661, retro_amel_844,
Canis familiaris	ENSCAFG00000023471	possible_ortholog	3 retrogenes	retro_cfam_1048, retro_cfam_640, retro_cfam_81,
Callithrix jacchus	ENSCJAG00000010052	possible_ortholog	5 retrogenes	retro_cjac_200, retro_cjac_229, retro_cjac_344, retro_cjac_74, retro_cjac_88,
Dasypus novemcinctus	ENSDNOG00000004813	possible_ortholog	12 retrogenes	retro_dnov_131, retro_dnov_1340, retro_dnov_1432, retro_dnov_1558, retro_dnov_1664, retro_dnov_2022, retro_dnov_2183, retro_dnov_2576, retro_dnov_2635, retro_dnov_491, retro_dnov_538, retro_dnov_771,
Dipodomys ordii	ENSDORG00000006291	possible_ortholog	11 retrogenes	retro_dord_114, retro_dord_13, retro_dord_372, retro_dord_396, retro_dord_430, retro_dord_472, retro_dord_478, retro_dord_549, retro_dord_584, retro_dord_662, retro_dord_737,
Erinaceus europaeus	ENSEEUG00000002329	possible_ortholog	9 retrogenes	retro_eeur_127, retro_eeur_143, retro_eeur_193, retro_eeur_283, retro_eeur_289, retro_eeur_308, retro_eeur_58, retro_eeur_629, retro_eeur_72,
Gorilla gorilla	ENSGGOG00000007678	possible_ortholog	9 retrogenes	retro_ggor_1290, retro_ggor_1291, retro_ggor_1502, retro_ggor_1749, retro_ggor_179, retro_ggor_203, retro_ggor_2373, retro_ggor_2858, retro_ggor_2885,
Loxodonta africana	ENSLAFG00000023133	possible_ortholog	2 retrogenes	retro_lafr_1122, retro_lafr_185,
Myotis lucifugus	ENSMLUG00000017064	ortholog_one2one	10 retrogenes	retro_mluc_1201, retro_mluc_1255, retro_mluc_1298, retro_mluc_1646, retro_mluc_1730, retro_mluc_1865, retro_mluc_1867, retro_mluc_2264, retro_mluc_37, retro_mluc_380,
Myotis lucifugus	ENSMLUG00000029449	possible_ortholog	1 retrogene	retro_mluc_1585,
Macaca mulatta	ENSMMUG00000015563	possible_ortholog	8 retrogenes	retro_mmul_1198, retro_mmul_193, retro_mmul_2189, retro_mmul_222, retro_mmul_2470, retro_mmul_282, retro_mmul_606, retro_mmul_73,
Monodelphis domestica	ENSMODG00000001819	possible_ortholog	3 retrogenes	retro_mdom_1367, retro_mdom_1751, retro_mdom_205,
Oryctolagus cuniculus	ENSOCUG00000003613	ortholog_one2one	10 retrogenes	retro_ocun_1087, retro_ocun_1163, retro_ocun_1209, retro_ocun_1259, retro_ocun_1268, retro_ocun_1339, retro_ocun_164, retro_ocun_288, retro_ocun_381, retro_ocun_851,
Pongo abelii	ENSPPYG00000025871	possible_ortholog	1 retrogene	retro_pabe_117,
Rattus norvegicus	ENSRNOG00000004426	possible_ortholog	2 retrogenes	retro_rnor_117, retro_rnor_161,
Tupaia belangeri	ENSTBEG00000004626	possible_ortholog	95 retrogenes	retro_tbel_1019, retro_tbel_1022, retro_tbel_1057, retro_tbel_1058, retro_tbel_106, retro_tbel_1081, retro_tbel_1086, retro_tbel_1090, retro_tbel_1134, retro_tbel_1255, retro_tbel_1385, retro_tbel_1403, retro_tbel_1459, retro_tbel_1493, retro_tbel_1565, retro_tbel_1566, retro_tbel_157, retro_tbel_1584, retro_tbel_1606, retro_tbel_1623, retro_tbel_1673, retro_tbel_1678, retro_tbel_1760, retro_tbel_1825, retro_tbel_1863, retro_tbel_1902, retro_tbel_1946, retro_tbel_1952, retro_tbel_2067, retro_tbel_2119, retro_tbel_2122, retro_tbel_2123, retro_tbel_2238, retro_tbel_2354, retro_tbel_2408, retro_tbel_2605, retro_tbel_2671, retro_tbel_2739, retro_tbel_283, retro_tbel_2913, retro_tbel_2939, retro_tbel_2952, retro_tbel_3056, retro_tbel_3119, retro_tbel_3120, retro_tbel_3125, retro_tbel_3180, retro_tbel_3183, retro_tbel_3213, retro_tbel_3258, retro_tbel_3260, retro_tbel_3283, retro_tbel_3389, retro_tbel_3446, retro_tbel_3480, retro_tbel_3481, retro_tbel_3505, retro_tbel_3576, retro_tbel_3595, retro_tbel_3621, retro_tbel_3649, retro_tbel_3665, retro_tbel_3831, retro_tbel_3839, retro_tbel_3840, retro_tbel_3874, retro_tbel_3920, retro_tbel_396, retro_tbel_3977, retro_tbel_4021, retro_tbel_4053, retro_tbel_4133, retro_tbel_4149, retro_tbel_4224, retro_tbel_426, retro_tbel_4284, retro_tbel_4305, retro_tbel_4313, retro_tbel_4474, retro_tbel_4484, retro_tbel_4498, retro_tbel_4499, retro_tbel_4502, retro_tbel_4504, retro_tbel_4547, retro_tbel_4554, retro_tbel_4565, retro_tbel_4628, retro_tbel_703, retro_tbel_709, retro_tbel_763, retro_tbel_843, retro_tbel_866, retro_tbel_871, retro_tbel_874,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cpor_406	62.90	78.21	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cpor_409	86.08	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cpor_502	68.28	92.31	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cpor_591	72.61	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cpor_990	88.61	50.64	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cpor_1040	61.70	87.18	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cpor_1433	81.13	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCPOG00000005819 retrocopies

Parental gene:	UBIZ, ENSCPOG00000005819
Aliases:	None
Description:	Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62978]
Organism:	*Guinea Pig (Cavia porcellus)*
Coordinates:	scaffold_48:9379564..9381556(-)

Parental gene:

UBIZ, ENSCPOG00000005819