RetrogeneDB ID: | retro_cpor_1040 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:46077016..46077421(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBIZ | ||
Ensembl ID: | ENSCPOG00000005819 | ||
Aliases: | None | ||
Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62978] |
Percent Identity: | 61.7 % |
Parental protein coverage: | 87.18 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | SDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLSDYNIQKESTLHLVLRLRGGAKKR-KKKSYT |
SDT.ENV.AKIQDK.GI.P.QQ.RLI.AGKQ..E....LSDYNI..ESTLH.V.RL.....K..KK...T | |
Retrocopy | SDTTENVYAKIQDKKGILP*QQ<RLIYAGKQM<EVHYFLSDYNIHTESTLHRVIRLFVVLRKE<KKSYTT |
Parental | TPKKNKHKRKKVKLAVLKYYKVDE-NGKISRLRRECPSDECGA-GVFMASHFDRHYCGKCCLTYCFNKPE |
..K.N........L.VLKYY.VDE.NG.IS.L...CPSD.CG..G.F.A.HFDRHYCGKCCLT.CFNK.E | |
Retrocopy | PKKNNR*RESRLMLTVLKYYQVDE<NGQISCL*HKCPSDKCGV>GIFIACHFDRHYCGKCCLT*CFNKSE |
Parental | D |
D | |
Retrocopy | D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 139 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 181 .95 RPM |
SRP017611_liver | 0 .00 RPM | 119 .39 RPM |
SRP040447_lung | 0 .00 RPM | 178 .79 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 156 .32 RPM |