RetrogeneDB ID: | retro_cpor_1433 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_82:2174422..2174883(+) | ||
Located in intron of: | ENSCPOG00000012232 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBIZ | ||
Ensembl ID: | ENSCPOG00000005819 | ||
Aliases: | None | ||
Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62978] |
Percent Identity: | 81.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MQIFVK-TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDYNIQKESTLH |
MQIF.K.TLTGKTITL..EPSDT.ENVKAKIQDKEGI.P..Q.........LEDG.TLSDYNIQKE.TLH | |
Retrocopy | MQIFIK<TLTGKTITLKAEPSDTVENVKAKIQDKEGI-PPDQQRLIFAGN<LEDGCTLSDYNIQKETTLH |
Parental | LVLRLRGGAKKRKKKSYTTPKKNKHKRKKV-KLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFD |
LVLR..GGAKKRKK.SYTTPKK.KHKRKK..KLAVLKYY.VDENGKI..LR.ECPSDECGAGVFM.SHFD | |
Retrocopy | LVLRFHGGAKKRKK-SYTTPKKSKHKRKKL>KLAVLKYYMVDENGKIGCLRQECPSDECGAGVFMVSHFD |
Parental | RHYCGKCCLTYCFNKPEDK |
RHYCGKCCLTYCFNKPEDK | |
Retrocopy | RHYCGKCCLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 139 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 181 .95 RPM |
SRP017611_liver | 0 .04 RPM | 119 .39 RPM |
SRP040447_lung | 0 .03 RPM | 178 .79 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 156 .32 RPM |