RetrogeneDB ID: | retro_amel_1635 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193812.1:30097..30490(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSAMEG00000000593 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 66.91 % |
Parental protein coverage: | 51.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | PQNEYIELHRKRCGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR |
PQNEYIELH.K..G..LDYH.KK.KKEG.......K...K..G.KAKL.HKQ..AEK.QMKK.IKMHE.R | |
Retrocopy | PQNEYIELHHKCYG*CLDYHGKKVKKEGQIGS*MFKEGQKD-GQKAKLCHKQHDAEKTQMKKVIKMHEER |
Parental | NTKQKNDEKTPQGAVPAYLLDREGQ-SRAKVLSNMIK-QKRKEKAGKWEVPLPKVRAQ-GETEVLK |
N.KQKNDEKTPQGA.P.YLL.REGQ...A.VLSN.I..QK.KE.AGKWEVPLP...AQ.GET.V.K | |
Retrocopy | NPKQKNDEKTPQGAGPGYLLKREGQ<AHAEVLSNTIN<QK*KEIAGKWEVPLPRAHAQ<GETQVFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |