RetrogeneDB ID: | retro_tbel_1476 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4838:241895..242414(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 84.83 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESRE-AHERSKKAKKMIGLKAKLY-HK-QRHAEKIQMKKTIKM |
MPQ..YIELH.K.Y.YRLDYHEKKRKKES.E.AHE.SKKAKKM.GLKAKLY.H..Q.HAEKIQMKKTIKM | |
Retrocopy | MPQHKYIELHCKHYQYRLDYHEKKRKKESPE>AHECSKKAKKMTGLKAKLYHHQ>QLHAEKIQMKKTIKM |
Parental | HEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQK-RKEKAGKWEVPLPKVRAQGETEVLKVI |
HEKRNTKQKNDEKTPQGA...YL.DREGQS.AKVLSNMIKQK..KEKAGKWEVPLPKVRAQGETEVLK.I | |
Retrocopy | HEKRNTKQKNDEKTPQGA---YLVDREGQS*AKVLSNMIKQK>QKEKAGKWEVPLPKVRAQGETEVLKII |
Parental | RTGKR-EKAWKRMVTKVCF-GD-FT-KPPKYERFIRPM |
RTGKR..KAWKRMVTKVCF.GD.FT.KPPKYERFI.PM | |
Retrocopy | RTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |