RetrogeneDB ID: | retro_etel_1479 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_272523:13550..14084(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 65.61 % |
Parental protein coverage: | 71.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKK |
K.K.....P.GAVPAYLLD.EG.S..K..SNMIK.K..EKAGKWEVPLPK.RAQGE.EVLK.I..GK.K. | |
Retrocopy | KKKRIMRKPPGAVPAYLLDIEGESQDKIFSNMIKPK--EKAGKWEVPLPKFRAQGEPEVLKPI*LGKTKI |
Parental | KAWKRMVTKVCFVGDGFTRKPPKYERFIXXXGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTL-G |
KA.KRMV.........F..KPPKYE.F....GLRFKKA.VTHP.L.ATFCLPILGVK..PSSP...TL.G | |
Retrocopy | KAGKRMVLRFAL----FGWKPPKYE*FFRPMGLRFKKAQVTHPDLQATFCLPILGVKMKPSSPRGITL<G |
Parental | VITKGTVIEVNVSELGLVTQGGKVI-WGKYAQVTNNPENDGCINAVLLV |
...KG.VI...VSEL.LVTQGGK.I..GK.AQ..NNPEN.GCI.AVLLV | |
Retrocopy | ITIKGEVI---VSELALVTQGGKAI>RGKCAQLPNNPENAGCIRAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |