RetrogeneDB ID: | retro_tbel_1329 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4401:14315..14781(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 75.31 % |
Parental protein coverage: | 59.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | LDYHEKKR-KKESR-EAHERSKKAKKMIGLKAKLYHKQR-HAEKIQMKKTIKMHEKRNTKQKNDEKTPQG |
LD.HEKKR.K...R.EAHE.SKKAKKMIGLKAKL.HKQ..HAEKIQMKKTIKMHE.RNTKQKNDEKTPQG | |
Retrocopy | LDFHEKKRKKRNVR<EAHECSKKAKKMIGLKAKLCHKQH<HAEKIQMKKTIKMHENRNTKQKNDEKTPQG |
Parental | AVPAYLLDR-EGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLK-VIRTGKR-EKAWKRMVTK |
AVPAYL..R...Q....VLSN.IKQK.KEK..KWEV.LPKV.AQGET...K.VIRTGKR.EKA.KR.V.K | |
Retrocopy | AVPAYLQRR>QSQAK--VLSNVIKQKWKEKVRKWEVSLPKV*AQGETKDEK<VIRTGKRKEKA*KRRVIK |
Parental | VCF--GDFT-KPPKYERFIRPM |
VCF...DFT.KPPK.E.FIRPM | |
Retrocopy | VCFVEDDFTRKPPKCESFIRPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |