RetrogeneDB ID: | retro_tbel_4401 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_80994:3986..4392(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 73.94 % |
Parental protein coverage: | 53.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | EYIELHRKRYGYRLDYHEK-KRKK-ESREAHERSKKAKK-MIGLKAKLYHKQRHAEKIQMKKTIKMHEKR |
EYIELH.K.YGYRLDYHEK.K.K....REAHE.SKKAKK.MIGLK.KLY.KQRHAEKIQM.KT...HEKR | |
Retrocopy | EYIELHHKCYGYRLDYHEK<KEKEGKLREAHEPSKKAKK>MIGLKSKLYRKQRHAEKIQMTKTNRVHEKR |
Parental | NTKQK-NDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGET-EVLKVIRTG |
NT.Q...DE.TP.GA.PAYLLDR..Q.RAKVLSNMIK.KRKEKAGKWE.PLP.V.AQGET.EVLK..... | |
Retrocopy | NTEQR<KDERTPRGAAPAYLLDR--QPRAKVLSNMIKLKRKEKAGKWETPLPGVQAQGET<EVLKLFEGT |
Parental | KR |
.R | |
Retrocopy | SR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |