RetrogeneDB ID: | retro_tbel_4104 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_67472:1263..1767(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 68.21 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKK-MIGLKAKLYHKQRHAEKIQMKKTIKMHE |
MPQN.Y.E.H.K.Y.Y.LDYH.KKRKKESRE.H..SKK.KK.MI.LKAKLYHKQ.HA.KIQ.KK.IKMHE | |
Retrocopy | MPQNIYMEFHHKCYKYHLDYHKKKRKKESRETHKDSKKGKK>MISLKAKLYHKQHHAKKIQTKKSIKMHE |
Parental | KRN-TKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRT |
KR..TKQKNDEKTPQGAVPAY.L.REGQS.AKVLSNMIKQK.KEK.G.WEVPLPK......T...K.... | |
Retrocopy | KRK<TKQKNDEKTPQGAVPAYQLEREGQS*AKVLSNMIKQKQKEKVG*WEVPLPKLQT**KTRSIKTY-S |
Parental | GKREKAWKRMVTKVCFGDFT-KPPKYERFIRPM |
.K.EK...R.........FT.KPPKYERF.RPM | |
Retrocopy | NKKEK--ERSMEEDGWRGFTRKPPKYERFTRPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |