RetrogeneDB ID: | retro_tbel_4422 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_8228:74602..75048(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 84.67 % |
Parental protein coverage: | 56.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDR |
...KESREAH..SKKAKKMI.LKAKLY.KQ.HAEKIQMKK.IKMHEKRNTKQKNDEKT.QGAVPAYLLDR | |
Retrocopy | EKGKESREAHACSKKAKKMIHLKAKLYYKQYHAEKIQMKKAIKMHEKRNTKQKNDEKTSQGAVPAYLLDR |
Parental | EGQSRAKVLSNMIKQ-KRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKR-EKAWKRMVTKVCF-GD-FT- |
EGQS.AKVLSNMIKQ.KRK.KAGKWEVPLPKV..QGE..VLKVIRTGKR..KAWKRMVTKVCF.GD.FT. | |
Retrocopy | EGQS*AKVLSNMIKQ<KRKAKAGKWEVPLPKV*TQGEIRVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTR |
Parental | KPPKYERFIR |
KPP.YERFIR | |
Retrocopy | KPPNYERFIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |