RetrogeneDB ID: | retro_cfam_1292 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:21788987..21789478(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000008012 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000008311 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.88 % |
Parental protein coverage: | 63.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKV |
K...K.........KTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKV.AQ.ETEVLKV | |
Retrocopy | KKRKKEGLEAHERSKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVCAQEETEVLKV |
Parental | IRTGKRKKKAWKRMVTKVCFV-GDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPS |
IRTG.RKKKAWKRMVTKVCF..GDGFT.KPPKYERFIRPMGL.FKKAHVTHPELKATFCLPILGVKKNPS | |
Retrocopy | IRTGQRKKKAWKRMVTKVCFL<GDGFTKKPPKYERFIRPMGLHFKKAHVTHPELKATFCLPILGVKKNPS |
Parental | SPLYTTLGVITKGTVIEVNVSELGL |
SPLYTTLGVITKGT.IEVNVSELGL | |
Retrocopy | SPLYTTLGVITKGTIIEVNVSELGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 6 .01 RPM |
SRP017611_brain | 0 .00 RPM | 2 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .23 RPM |
SRP017611_liver | 0 .00 RPM | 5 .73 RPM |